IL_8IFE_200

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

8IFE|1|2m|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|2m|A|599
8IFE|1|2m|G|600
8IFE|1|2m|G|601
8IFE|1|2m|G|602
8IFE|1|2m|C|603
8IFE|1|2m|A|604
8IFE|1|2m|A|605
8IFE|1|2m|G|606
8IFE|1|2m|U|607
8IFE|1|2m|C|608
*
8IFE|1|2m|G|635
8IFE|1|2m|C|636
8IFE|1|2m|U|637

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2p

40S ribosomal protein S3

Chain 3B

40S ribosomal protein S23

Chain 3G

40S ribosomal protein S2

Chain 3I

40S ribosomal protein S9

Chain 3Q

40S ribosomal protein S30