IL_8IFE_203

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8IFE|1|2m|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_203 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1242

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8IFE|1|2m|G|665
8IFE|1|2m|U|666
8IFE|1|2m|U|667
8IFE|1|2m|A|668
8IFE|1|2m|A|669
8IFE|1|2m|A|670
8IFE|1|2m|A|671
*
8IFE|1|2m|U|1161
8IFE|1|2m|C|1162

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3B

40S ribosomal protein S23

Chain 3C

40S ribosomal protein S26