IL_8IFE_219
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFE_219 not in the Motif Atlas
- Geometric match to IL_5J7L_037
- Geometric discrepancy: 0.084
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8IFE|1|2m|C|1047
8IFE|1|2m|G|1048
8IFE|1|2m|A|1049
8IFE|1|2m|A|1050
8IFE|1|2m|G|1051
*
8IFE|1|2m|C|1067
8IFE|1|2m|G|1068
8IFE|1|2m|U|1069
8IFE|1|2m|A|1070
8IFE|1|2m|G|1071
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1D
- 60S ribosomal protein L8
- Chain 3C
- 40S ribosomal protein S26
- Chain 3L
- 40S ribosomal protein S14
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