IL_8IFE_231

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGG,CCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_231 not in the Motif Atlas

Geometric match to IL_6CZR_171

Geometric discrepancy: 0.2968

The information below is about IL_6CZR_171

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

8IFE|1|2m|C|1279
8IFE|1|2m|G|1280
8IFE|1|2m|G|1281
*
8IFE|1|2m|C|1316
8IFE|1|2m|C|1317
8IFE|1|2m|G|1318

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2u

40S ribosomal protein S10

Chain 3J

40S ribosomal protein S12

Chain 3R

Ubiquitin-40S ribosomal protein S27a