IL_8IFE_241

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UUACGCGACCCCC*GGCGUCCCCCAA

Length

25 nucleotides

Bulged bases

8IFE|1|2m|C|1416, 8IFE|1|2m|C|1418, 8IFE|1|2m|C|1436, 8IFE|1|2m|C|1437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|2m|U|1407
8IFE|1|2m|U|1408
8IFE|1|2m|A|1409
8IFE|1|2m|C|1410
8IFE|1|2m|G|1411
8IFE|1|2m|C|1412
8IFE|1|2m|G|1413
8IFE|1|2m|A|1414
8IFE|1|2m|C|1415
8IFE|1|2m|C|1416
8IFE|1|2m|C|1417
8IFE|1|2m|C|1418
8IFE|1|2m|C|1419
*
8IFE|1|2m|G|1428
8IFE|1|2m|G|1429
8IFE|1|2m|C|1430
8IFE|1|2m|G|1431
8IFE|1|2m|U|1432
8IFE|1|2m|C|1433
8IFE|1|2m|C|1434
8IFE|1|2m|C|1435
8IFE|1|2m|C|1436
8IFE|1|2m|C|1437
8IFE|1|2m|A|1438
8IFE|1|2m|A|1439

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 21

40S ribosomal protein S20

Chain 2x

40S ribosomal protein S16