IL_8IFE_242

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CAAG*CCCGAG

Length

10 nucleotides

Bulged bases

8IFE|1|2m|A|1474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|2m|C|1453
8IFE|1|2m|A|1454
8IFE|1|2m|A|1455
8IFE|1|2m|G|1456
*
8IFE|1|2m|C|1470
8IFE|1|2m|C|1471
8IFE|1|2m|C|1472
8IFE|1|2m|G|1473
8IFE|1|2m|A|1474
8IFE|1|2m|G|1475

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2r

40S ribosomal protein S5

Chain 2x

40S ribosomal protein S16

Chain 2y

40S ribosomal protein S17

Chain 3F

Receptor of activated protein C kinase 1