IL_8IFE_246

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_246 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1434

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8IFE|1|2m|G|1604
8IFE|1|2m|G|1605
8IFE|1|2m|G|1606
8IFE|1|2m|A|1607
8IFE|1|2m|U|1608
8IFE|1|2m|C|1609
8IFE|1|2m|G|1610
*
8IFE|1|2m|C|1629
8IFE|1|2m|A|1630
8IFE|1|2m|U|1631
8IFE|1|2m|G|1632
8IFE|1|2m|A|1633
8IFE|1|2m|A|1634
8IFE|1|2m|C|1635

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 2z

40S ribosomal protein S18