IL_8IFE_251

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

8IFE|1|2m|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_251 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2823

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8IFE|1|2m|C|1708
8IFE|1|2m|G|1709
8IFE|1|2m|C|1710
8IFE|1|2m|U|1711
*
8IFE|1|2m|A|1822
8IFE|1|2m|A|1823
8IFE|1|2m|A|1824
8IFE|1|2m|A|1825
8IFE|1|2m|G|1826

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

60S ribosomal protein L41

Chain 3B

40S ribosomal protein S23