IL_8IFE_256

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_256 not in the Motif Atlas

Homologous match to IL_8C3A_478

Geometric discrepancy: 0.0498

The information below is about IL_8C3A_478

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8IFE|1|2m|U|1733
8IFE|1|2m|G|1734
8IFE|1|2m|A|1735
8IFE|1|2m|G|1736
*
8IFE|1|2m|C|1798
8IFE|1|2m|G|1799
8IFE|1|2m|A|1800
8IFE|1|2m|A|1801

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2Q

60S ribosomal protein L24

Chain 2t

40S ribosomal protein S8

Chain 3H

40S ribosomal protein S6