IL_8IFE_275

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GACAGGAUUGACAG*CUUUCUCGAUUC

Length

26 nucleotides

Bulged bases

8IFE|1|2m|G|1285, 8IFE|1|2m|U|1306, 8IFE|1|2m|U|1314, 8IFE|1|2m|U|1315

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|2m|G|1281
8IFE|1|2m|A|1282
8IFE|1|2m|C|1283
8IFE|1|2m|A|1284
8IFE|1|2m|G|1285
8IFE|1|2m|G|1286
8IFE|1|2m|A|1287
8IFE|1|2m|U|1288
8IFE|1|2m|U|1289
8IFE|1|2m|G|1290
8IFE|1|2m|A|1291
8IFE|1|2m|C|1292
8IFE|1|2m|A|1293
8IFE|1|2m|G|1294
*
8IFE|1|2m|C|1305
8IFE|1|2m|U|1306
8IFE|1|2m|U|1307
8IFE|1|2m|U|1308
8IFE|1|2m|C|1309
8IFE|1|2m|U|1310
8IFE|1|2m|C|1311
8IFE|1|2m|G|1312
8IFE|1|2m|A|1313
8IFE|1|2m|U|1314
8IFE|1|2m|U|1315
8IFE|1|2m|C|1316

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2u

40S ribosomal protein S10

Chain 2w

40S ribosomal protein S15

Chain 3E

40S ribosomal protein S29

Chain 3J

40S ribosomal protein S12

Chain 3R

Ubiquitin-40S ribosomal protein S27a