IL_8IFE_277

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

8IFE|1|2m|C|1403, 8IFE|1|2m|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_277 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.3066

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|2m|A|1402
8IFE|1|2m|C|1403
8IFE|1|2m|U|1404
8IFE|1|2m|A|1405
8IFE|1|2m|G|1406
*
8IFE|1|2m|C|1440
8IFE|1|2m|U|1441
8IFE|1|2m|U|1442
8IFE|1|2m|C|1443
8IFE|1|2m|U|1444

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 21

40S ribosomal protein S20

Chain 2x

40S ribosomal protein S16