3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUGAAAC*G(OMU)GGAUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INE_018 not in the Motif Atlas
Homologous match to IL_8C3A_016
Geometric discrepancy: 0.1117
The information below is about IL_8C3A_016
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_66414.7
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8INE|1|2|G|415
8INE|1|2|U|416
8INE|1|2|G|417
8INE|1|2|A|418
8INE|1|2|A|419
8INE|1|2|A|420
8INE|1|2|C|421
*
8INE|1|8|G|13
8INE|1|8|OMU|14
8INE|1|8|G|15
8INE|1|8|G|16
8INE|1|8|A|17
8INE|1|8|U|18
8INE|1|8|C|19

Current chains

Chain 2
28S rRNA
Chain 8
5.8S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain D
60S ribosomal protein L4
Chain Y
60S ribosomal protein L17
Chain k
60S ribosomal protein L32

Coloring options:


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