IL_8INE_045

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAC*GGUCG

Length

9 nucleotides

Bulged bases

8INE|1|2|C|1202

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INE_045 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3115

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8INE|1|2|C|1093
8INE|1|2|G|1094
8INE|1|2|A|1095
8INE|1|2|C|1096
*
8INE|1|2|G|1199
8INE|1|2|G|1200
8INE|1|2|U|1201
8INE|1|2|C|1202
8INE|1|2|G|1203

Current chains

Chain 2

28S rRNA

Nearby chains

Chain b

60S ribosomal protein L18a

Chain c

60S ribosomal protein L21