3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGUCC*G(7MG)UC
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INE_063 not in the Motif Atlas
Geometric match to IL_8CRE_467
Geometric discrepancy: 0.3646
The information below is about IL_8CRE_467
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_25873.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
6

Unit IDs

8INE|1|2|G|1586
8INE|1|2|G|1587
8INE|1|2|U|1588
8INE|1|2|C|1589
8INE|1|2|C|1590
*
8INE|1|2|G|1604
8INE|1|2|7MG|1605
8INE|1|2|U|1606
8INE|1|2|C|1607

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 9
Zinc finger protein 593
Chain B
60S ribosomal protein L3
Chain M
60S ribosomal protein L37

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4511 s