3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUCGCAGACCCGACGCCCGCCACG*CG
Length
26 nucleotides
Bulged bases
8INE|1|2|C|1704, 8INE|1|2|C|1707, 8INE|1|2|G|1708, 8INE|1|2|C|1714
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INE_068 not in the Motif Atlas
Homologous match to IL_8P9A_264
Geometric discrepancy: 0.5948
The information below is about IL_8P9A_264
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_25463.2
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
3

Unit IDs

8INE|1|2|C|1694
8INE|1|2|U|1695
8INE|1|2|C|1696
8INE|1|2|G|1697
8INE|1|2|C|1698
8INE|1|2|A|1699
8INE|1|2|G|1700
8INE|1|2|A|1701
8INE|1|2|C|1702
8INE|1|2|C|1703
8INE|1|2|C|1704
8INE|1|2|G|1705
8INE|1|2|A|1706
8INE|1|2|C|1707
8INE|1|2|G|1708
8INE|1|2|C|1709
8INE|1|2|C|1714
8INE|1|2|C|1715
8INE|1|2|G|1716
8INE|1|2|C|1717
8INE|1|2|C|1718
8INE|1|2|A|1719
8INE|1|2|C|1720
8INE|1|2|G|1721
*
8INE|1|2|C|1841
8INE|1|2|G|1842

Current chains

Chain 2
28S rRNA

Nearby chains

Chain C
60S ribosomal protein L29
Chain D
60S ribosomal protein L4
Chain Z
60S ribosomal protein L18
Chain c
60S ribosomal protein L21
Chain p
60S ribosomal protein L7

Coloring options:


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