3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGC*GG
Length
5 nucleotides
Bulged bases
8INE|1|2|G|1815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INE_071 not in the Motif Atlas
Homologous match to IL_8C3A_048
Geometric discrepancy: 0.1996
The information below is about IL_8C3A_048
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

8INE|1|2|C|1814
8INE|1|2|G|1815
8INE|1|2|C|1816
*
8INE|1|2|G|1823
8INE|1|2|G|1824

Current chains

Chain 2
28S rRNA

Nearby chains

Chain C
60S ribosomal protein L29
Chain c
60S ribosomal protein L21
Chain r
60S ribosomal protein L5

Coloring options:


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