IL_8INE_127

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCU*G(B8W)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INE_127 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.1868

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8INE|1|2|U|3925
8INE|1|2|C|3926
8INE|1|2|U|3927
*
8INE|1|2|G|4184
8INE|1|2|B8W|4185
8INE|1|2|A|4186

Current chains

Chain 2

28S rRNA

Nearby chains

Chain U

60S ribosomal protein L15

Chain W

60S ribosomal protein L36a

Chain m

60S ribosomal protein L8