IL_8INE_165

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

8INE|1|2|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INE_165 not in the Motif Atlas

Geometric match to IL_4WF9_035

Geometric discrepancy: 0.2036

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8INE|1|2|G|5012
8INE|1|2|C|5013
8INE|1|2|A|5014
*
8INE|1|2|U|5035
8INE|1|2|C|5036

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 7

Probable ribosome biogenesis protein RLP24