IL_8INF_010

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGGCG*CGCCGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCGGCG,CGCCGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_010 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3721

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8INF|1|2|C|174
8INF|1|2|C|175
8INF|1|2|G|176
8INF|1|2|G|177
8INF|1|2|C|178
8INF|1|2|G|179
*
8INF|1|2|C|257
8INF|1|2|G|258
8INF|1|2|C|259
8INF|1|2|C|260
8INF|1|2|G|261
8INF|1|2|G|262

Current chains

Chain 2

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L35

Chain Q

60S ribosomal protein L13

Chain w

Ribosome biogenesis protein NOP53