3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GCU*AGU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_038 not in the Motif Atlas
Geometric match to IL_4WF9_042
Geometric discrepancy: 0.1908
The information below is about IL_4WF9_042
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8INF|1|2|G|752
8INF|1|2|C|753
8INF|1|2|U|754
*
8INF|1|2|A|909
8INF|1|2|G|910
8INF|1|2|U|911

Current chains

Chain 2
28S rRNA

Nearby chains

Chain R
Translation machinery-associated protein 16
Chain b
60S ribosomal protein L18a

Coloring options:


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