IL_8INF_062

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

8INF|1|2|A|1650, 8INF|1|2|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INF|1|2|C|1520
8INF|1|2|C|1521
8INF|1|2|OMG|1522
8INF|1|2|A|1523
8INF|1|2|A2M|1524
8INF|1|2|A|1525
8INF|1|2|G|1526
*
8INF|1|2|C|1648
8INF|1|2|U|1649
8INF|1|2|A|1650
8INF|1|2|G|1651
8INF|1|2|U|1652
8INF|1|2|A|1653
8INF|1|2|G|1654
8INF|1|2|C|1655
8INF|1|2|U|1656
8INF|1|2|G|1657

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain M

60S ribosomal protein L37

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15

Chain f

Protein SDA1 homolog