3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GC*GGU
Length
5 nucleotides
Bulged bases
8INF|1|2|G|1577
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_064 not in the Motif Atlas
Homologous match to IL_8C3A_032
Geometric discrepancy: 0.2053
The information below is about IL_8C3A_032
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

8INF|1|2|G|1550
8INF|1|2|C|1551
*
8INF|1|2|G|1576
8INF|1|2|G|1577
8INF|1|2|U|1578

Current chains

Chain 2
28S rRNA

Nearby chains

Chain X
60S ribosomal protein L37a
Chain a
60S ribosomal protein L19
Chain m
60S ribosomal protein L8

Coloring options:


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