IL_8INF_071

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

8INF|1|2|C|1704, 8INF|1|2|C|1707, 8INF|1|2|G|1708, 8INF|1|2|C|1714, 8INF|1|2|C|1718

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_071 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.5633

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8INF|1|2|C|1694
8INF|1|2|U|1695
8INF|1|2|C|1696
8INF|1|2|G|1697
8INF|1|2|C|1698
8INF|1|2|A|1699
8INF|1|2|G|1700
8INF|1|2|A|1701
8INF|1|2|C|1702
8INF|1|2|C|1703
8INF|1|2|C|1704
8INF|1|2|G|1705
8INF|1|2|A|1706
8INF|1|2|C|1707
8INF|1|2|G|1708
8INF|1|2|C|1709
8INF|1|2|C|1714
8INF|1|2|C|1715
8INF|1|2|G|1716
8INF|1|2|C|1717
8INF|1|2|C|1718
8INF|1|2|A|1719
8INF|1|2|C|1720
8INF|1|2|G|1721
*
8INF|1|2|C|1841
8INF|1|2|G|1842

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain p

60S ribosomal protein L7