3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGCCCGAU*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_078 not in the Motif Atlas
Geometric match to IL_7RQB_037
Geometric discrepancy: 0.1355
The information below is about IL_7RQB_037
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_15861.7
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
12

Unit IDs

8INF|1|2|C|1911
8INF|1|2|G|1912
8INF|1|2|C|1913
8INF|1|2|C|1914
8INF|1|2|C|1915
8INF|1|2|G|1916
8INF|1|2|A|1917
8INF|1|2|U|1918
*
8INF|1|2|G|2064
8INF|1|2|G|2065

Current chains

Chain 2
28S rRNA

Nearby chains

Chain V
60S ribosomal protein L13a
Chain b
60S ribosomal protein L18a
Chain n
60S ribosomal protein L35a
Chain p
60S ribosomal protein L7

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3644 s