3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GUGGC*GAAUC
Length
10 nucleotides
Bulged bases
8INF|1|2|G|1975
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_086 not in the Motif Atlas
Homologous match to IL_8C3A_058
Geometric discrepancy: 0.4854
The information below is about IL_8C3A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_30542.5
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

8INF|1|2|G|1973
8INF|1|2|U|1974
8INF|1|2|G|1975
8INF|1|2|G|1976
8INF|1|2|C|1977
*
8INF|1|2|G|1989
8INF|1|2|A|1990
8INF|1|2|A|1991
8INF|1|2|U|1992
8INF|1|2|C|1993

Current chains

Chain 2
28S rRNA

Nearby chains

Chain A
G Protein Nucleolar 2
Chain J
mRNA turnover protein 4 homolog
Chain y
60S ribosomal protein L12

Coloring options:


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