3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CCG*CG
Length
5 nucleotides
Bulged bases
8INF|1|2|C|2084
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_088 not in the Motif Atlas
Geometric match to IL_4C7O_003
Geometric discrepancy: 0.273
The information below is about IL_4C7O_003
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

8INF|1|2|C|2083
8INF|1|2|C|2084
8INF|1|2|G|2085
*
8INF|1|2|C|2272
8INF|1|2|G|2273

Current chains

Chain 2
28S rRNA

Nearby chains

Chain D
60S ribosomal protein L4
Chain Z
60S ribosomal protein L18
Chain k
60S ribosomal protein L32
Chain p
60S ribosomal protein L7

Coloring options:


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