3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGC*GCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: CGC,GCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_100 not in the Motif Atlas
Geometric match to IL_5TBW_027
Geometric discrepancy: 0.25
The information below is about IL_5TBW_027
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

8INF|1|2|C|2558
8INF|1|2|G|2559
8INF|1|2|C|2560
*
8INF|1|2|G|2567
8INF|1|2|C|2568
8INF|1|2|G|2569

Current chains

Chain 2
28S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0946 s
Application loaded.