3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GAG*UCU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_123 not in the Motif Atlas
Geometric match to IL_4YHW_001
Geometric discrepancy: 0.1748
The information below is about IL_4YHW_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8INF|1|2|G|3755
8INF|1|2|A|3756
8INF|1|2|G|3757
*
8INF|1|2|U|3768
8INF|1|2|C|3769
8INF|1|2|U|3770

Current chains

Chain 2
28S rRNA

Nearby chains

Chain A
G Protein Nucleolar 2
Chain f
Protein SDA1 homolog

Coloring options:


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