IL_8INF_136

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

8INF|1|2|A|4292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_136 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.2446

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8INF|1|2|G|4291
8INF|1|2|A|4292
8INF|1|2|U|4293
8INF|1|2|C|4294
*
8INF|1|2|G|4316
8INF|1|2|A|4317
8INF|1|2|C|4318

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain W

60S ribosomal protein L36a

Chain c

60S ribosomal protein L21