IL_8INF_138

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8INF|1|2|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_138 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.2805

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

8INF|1|2|G|4347
8INF|1|2|A|4348
8INF|1|2|C|4349
8INF|1|2|C|4350
*
8INF|1|2|G|4364
8INF|1|2|C|4365

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain W

60S ribosomal protein L36a

Chain Z

60S ribosomal protein L18