IL_8INF_141

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8INF|1|2|A|4518, 8INF|1|2|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_141 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.1239

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8INF|1|2|C|4458
8INF|1|2|U|4459
*
8INF|1|2|A|4517
8INF|1|2|A|4518
8INF|1|2|C|4519
8INF|1|2|G|4520

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L13a

Chain e

60S ribosomal protein L23