IL_8INF_146

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_146 not in the Motif Atlas

Geometric match to IL_4E5C_001

Geometric discrepancy: 0.1635

The information below is about IL_4E5C_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8INF|1|2|U|4580
8INF|1|2|G|4581
8INF|1|2|C|4582
*
8INF|1|2|G|4721
8INF|1|2|G|4722
8INF|1|2|A|4723

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 1

Uncharacterized protein C11orf98

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L13a

Chain z

Protein LLP homolog