IL_8INF_158

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUCGGAUAG*U(OMG)C(2MG)GAGUG

Length

19 nucleotides

Bulged bases

8INF|1|2|C|4757, 8INF|1|2|U|4758, 8INF|1|2|A|4764, 8INF|1|2|G|4873, 8INF|1|2|A|4874, 8INF|1|2|U|4876

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INF|1|2|C|4756
8INF|1|2|C|4757
8INF|1|2|U|4758
8INF|1|2|C|4759
8INF|1|2|G|4760
8INF|1|2|G|4761
8INF|1|2|A|4762
8INF|1|2|U|4763
8INF|1|2|A|4764
8INF|1|2|G|4765
*
8INF|1|2|U|4869
8INF|1|2|OMG|4870
8INF|1|2|C|4871
8INF|1|2|2MG|4872
8INF|1|2|G|4873
8INF|1|2|A|4874
8INF|1|2|G|4875
8INF|1|2|U|4876
8INF|1|2|G|4877

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain b

60S ribosomal protein L18a

Chain o

60S ribosomal protein L6