IL_8INK_032

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

8INK|1|2|A|932, 8INK|1|2|C|934, 8INK|1|2|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|A|732
8INK|1|2|A|733
8INK|1|2|G|734
8INK|1|2|G|735
*
8INK|1|2|C|928
8INK|1|2|A|929
8INK|1|2|G|930
8INK|1|2|C|931
8INK|1|2|A|932
8INK|1|2|G|933
8INK|1|2|C|934
8INK|1|2|A|935
8INK|1|2|C|936
8INK|1|2|U|937

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain S

60S ribosomal protein L14

Chain b

60S ribosomal protein L18a