IL_8INK_064

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

8INK|1|2|A|1699, 8INK|1|2|G|1700, 8INK|1|2|C|1707, 8INK|1|2|G|1708, 8INK|1|2|C|1718

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|C|1694
8INK|1|2|U|1695
8INK|1|2|C|1696
8INK|1|2|G|1697
8INK|1|2|C|1698
8INK|1|2|A|1699
8INK|1|2|G|1700
8INK|1|2|A|1701
8INK|1|2|C|1702
8INK|1|2|C|1703
8INK|1|2|C|1704
8INK|1|2|G|1705
8INK|1|2|A|1706
8INK|1|2|C|1707
8INK|1|2|G|1708
8INK|1|2|C|1709
8INK|1|2|C|1714
8INK|1|2|C|1715
8INK|1|2|G|1716
8INK|1|2|C|1717
8INK|1|2|C|1718
8INK|1|2|A|1719
8INK|1|2|C|1720
8INK|1|2|G|1721
*
8INK|1|2|C|1841
8INK|1|2|G|1842

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain T

60S ribosomal protein L21

Chain Z

60S ribosomal protein L18

Chain p

60S ribosomal protein L7