IL_8INK_114

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8INK|1|2|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INK_114 not in the Motif Atlas

Geometric match to IL_7A0S_067

Geometric discrepancy: 0.2234

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

8INK|1|2|U|3704
8INK|1|2|G|3705
*
8INK|1|2|U|3745
8INK|1|2|A|3746
8INK|1|2|A|3747
8INK|1|2|A|3748

Current chains

Chain 2

28S rRNA

Nearby chains

Chain N

Protein SDA1 homolog

Chain m

60S ribosomal protein L8

Chain w

G Protein Nucleolar 2