IL_8INK_119

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INK_119 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.1914

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8INK|1|2|G|3755
8INK|1|2|A|3756
8INK|1|2|G|3757
*
8INK|1|2|U|3768
8INK|1|2|C|3769
8INK|1|2|U|3770

Current chains

Chain 2

28S rRNA

Nearby chains

Chain N

Protein SDA1 homolog

Chain w

G Protein Nucleolar 2