IL_8INK_135
3D structure
- PDB id
- 8INK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8INK_135 not in the Motif Atlas
- Geometric match to IL_5TBW_110
- Geometric discrepancy: 0.1223
- The information below is about IL_5TBW_110
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8INK|1|2|C|4466
8INK|1|2|A|4467
8INK|1|2|U|4468
*
8INK|1|2|G|4489
8INK|1|2|C|4490
8INK|1|2|G|4491
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain B
- 60S ribosomal protein L3
- Chain V
- 60S ribosomal protein L13a
- Chain e
- 60S ribosomal protein L23
- Chain u
- Guanine nucleotide-binding protein-like 3
- Chain z
- Protein LLP homolog
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