IL_8INK_147

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

8INK|1|2|A|4656, 8INK|1|2|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INK_147 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2792

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8INK|1|2|U|4641
8INK|1|2|U|4642
*
8INK|1|2|A|4655
8INK|1|2|A|4656
8INK|1|2|U|4657
8INK|1|2|G|4658

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 9

Zinc finger protein 593

Chain a

60S ribosomal protein L19

Chain j

60S ribosomal protein L31