IL_8INK_152

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUCGGAUAG*U(OMG)C(2MG)GAGUG

Length

19 nucleotides

Bulged bases

8INK|1|2|C|4757, 8INK|1|2|U|4758, 8INK|1|2|A|4764, 8INK|1|2|G|4873, 8INK|1|2|A|4874, 8INK|1|2|U|4876

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|C|4756
8INK|1|2|C|4757
8INK|1|2|U|4758
8INK|1|2|C|4759
8INK|1|2|G|4760
8INK|1|2|G|4761
8INK|1|2|A|4762
8INK|1|2|U|4763
8INK|1|2|A|4764
8INK|1|2|G|4765
*
8INK|1|2|U|4869
8INK|1|2|OMG|4870
8INK|1|2|C|4871
8INK|1|2|2MG|4872
8INK|1|2|G|4873
8INK|1|2|A|4874
8INK|1|2|G|4875
8INK|1|2|U|4876
8INK|1|2|G|4877

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain b

60S ribosomal protein L18a

Chain o

60S ribosomal protein L6

Chain z

Protein LLP homolog