IL_8INK_161

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

8INK|1|2|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|U|5003
8INK|1|2|C|5004
8INK|1|2|G|5005
8INK|1|2|U|5006
8INK|1|2|A|5007
8INK|1|2|C|5008
8INK|1|2|G|5009
*
8INK|1|2|U|5039
8INK|1|2|U|5040
8INK|1|2|G|5041
8INK|1|2|A|5042
8INK|1|2|A|5043
8INK|1|2|A|5044

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain 7

Probable ribosome biogenesis protein RLP24

Chain B

60S ribosomal protein L3

Chain j

60S ribosomal protein L31