IL_8INK_171

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUUCC*GGGG

Length

10 nucleotides

Bulged bases

8INK|1|2|U|513, 8INK|1|2|U|514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INK_171 not in the Motif Atlas

Geometric match to IL_7DLZ_006

Geometric discrepancy: 0.3627

The information below is about IL_7DLZ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76776.4

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8INK|1|2|C|511
8INK|1|2|U|512
8INK|1|2|U|513
8INK|1|2|U|514
8INK|1|2|C|515
8INK|1|2|C|516
*
8INK|1|2|G|645
8INK|1|2|G|646
8INK|1|2|G|647
8INK|1|2|G|648

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13