IL_8INK_172

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGCGGACU*AGUGCGCCC

Length

18 nucleotides

Bulged bases

8INK|1|2|G|1185, 8INK|1|2|G|1189

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|G|1169
8INK|1|2|G|1170
8INK|1|2|G|1171
8INK|1|2|C|1172
8INK|1|2|G|1173
8INK|1|2|G|1174
8INK|1|2|A|1175
8INK|1|2|C|1176
8INK|1|2|U|1177
*
8INK|1|2|A|1184
8INK|1|2|G|1185
8INK|1|2|U|1186
8INK|1|2|G|1187
8INK|1|2|C|1188
8INK|1|2|G|1189
8INK|1|2|C|1190
8INK|1|2|C|1191
8INK|1|2|C|1192

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain R

60S ribosomal protein L5