IL_8INK_188

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

8INK|1|2|U|513, 8INK|1|2|U|514

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INK_188 not in the Motif Atlas

Geometric match to IL_8CRE_070

Geometric discrepancy: 0.3328

The information below is about IL_8CRE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8INK|1|2|U|512
8INK|1|2|U|513
8INK|1|2|U|514
8INK|1|2|C|515
*
8INK|1|2|G|646
8INK|1|2|G|647

Current chains

Chain 2

28S rRNA

Nearby chains

Chain Q

60S ribosomal protein L13