IL_8IPD_015
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 8IPD|1|2|G|409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPD_015 not in the Motif Atlas
- Geometric match to IL_8C3A_015
- Geometric discrepancy: 0.1741
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8IPD|1|2|G|387
8IPD|1|2|A|388
8IPD|1|2|A|389
8IPD|1|2|C|390
*
8IPD|1|2|G|401
8IPD|1|2|A|402
8IPD|1|2|G|403
8IPD|1|2|U|404
8IPD|1|2|U|405
8IPD|1|2|C|406
8IPD|1|2|A|407
8IPD|1|2|A|408
8IPD|1|2|G|409
8IPD|1|2|A|410
8IPD|1|2|G|411
8IPD|1|2|G|412
8IPD|1|2|G|413
8IPD|1|2|C|414
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- 60S ribosomal protein L39
- Chain Y
- 60S ribosomal protein L17
- Chain h
- 60S ribosomal protein L26
Coloring options: