IL_8IPD_044

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCGGACU*AGUGCGCC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPD|1|2|G|1170
8IPD|1|2|G|1171
8IPD|1|2|C|1172
8IPD|1|2|G|1173
8IPD|1|2|G|1174
8IPD|1|2|A|1175
8IPD|1|2|C|1176
8IPD|1|2|U|1177
*
8IPD|1|2|A|1184
8IPD|1|2|G|1185
8IPD|1|2|U|1186
8IPD|1|2|G|1187
8IPD|1|2|C|1188
8IPD|1|2|G|1189
8IPD|1|2|C|1190
8IPD|1|2|C|1191

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain R

60S ribosomal protein L5