IL_8IPD_049

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPD_049 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.2256

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8IPD|1|2|G|1403
8IPD|1|2|G|1404
8IPD|1|2|C|1405
*
8IPD|1|2|G|1412
8IPD|1|2|C|1413
8IPD|1|2|C|1414

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L29

Chain L

60S ribosomal protein L27a