IL_8IPD_064

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

8IPD|1|2|A|1699, 8IPD|1|2|G|1700, 8IPD|1|2|C|1707, 8IPD|1|2|G|1708, 8IPD|1|2|C|1714

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPD|1|2|C|1694
8IPD|1|2|U|1695
8IPD|1|2|C|1696
8IPD|1|2|G|1697
8IPD|1|2|C|1698
8IPD|1|2|A|1699
8IPD|1|2|G|1700
8IPD|1|2|A|1701
8IPD|1|2|C|1702
8IPD|1|2|C|1703
8IPD|1|2|C|1704
8IPD|1|2|G|1705
8IPD|1|2|A|1706
8IPD|1|2|C|1707
8IPD|1|2|G|1708
8IPD|1|2|C|1709
8IPD|1|2|C|1714
8IPD|1|2|C|1715
8IPD|1|2|G|1716
8IPD|1|2|C|1717
8IPD|1|2|C|1718
8IPD|1|2|A|1719
8IPD|1|2|C|1720
8IPD|1|2|G|1721
*
8IPD|1|2|C|1841
8IPD|1|2|G|1842

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain T

60S ribosomal protein L21

Chain Z

60S ribosomal protein L18

Chain p

60S ribosomal protein L7