IL_8IPD_074
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACCCAGAAAA*UGAAAAUGGAUG(OMG)CGC
- Length
- 27 nucleotides
- Bulged bases
- 8IPD|1|2|C|1935, 8IPD|1|2|C|1937, 8IPD|1|2|C|1938, 8IPD|1|2|G|2049
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IPD|1|2|G|1933
8IPD|1|2|A|1934
8IPD|1|2|C|1935
8IPD|1|2|C|1937
8IPD|1|2|C|1938
8IPD|1|2|A|1939
8IPD|1|2|G|1940
8IPD|1|2|A|1941
8IPD|1|2|A|1942
8IPD|1|2|A|1943
8IPD|1|2|A|1944
*
8IPD|1|2|U|2038
8IPD|1|2|G|2039
8IPD|1|2|A|2040
8IPD|1|2|A|2041
8IPD|1|2|A|2042
8IPD|1|2|A|2043
8IPD|1|2|U|2044
8IPD|1|2|G|2045
8IPD|1|2|G|2046
8IPD|1|2|A|2047
8IPD|1|2|U|2048
8IPD|1|2|G|2049
8IPD|1|2|OMG|2050
8IPD|1|2|C|2051
8IPD|1|2|G|2052
8IPD|1|2|C|2053
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain 4
- GTP-binding protein 4
- Chain B
- 60S ribosomal protein L3
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain V
- 60S ribosomal protein L13a
- Chain b
- 60S ribosomal protein L18a
- Chain n
- 60S ribosomal protein L35a
- Chain u
- Guanine nucleotide-binding protein-like 3
Coloring options: