IL_8IPD_077

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGG,CCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPD_077 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1728

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8IPD|1|2|C|1971
8IPD|1|2|G|1972
8IPD|1|2|G|1973
*
8IPD|1|2|C|1993
8IPD|1|2|C|1994
8IPD|1|2|G|1995

Current chains

Chain 2

28S rRNA

Nearby chains

Chain v

mRNA turnover protein 4 homolog

Chain y

60S ribosomal protein L12